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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50599.1COG4952 Predicted sugar isomerase. (424 aa)    
Predicted Functional Partners:
EAR50600.1
Short chain dehydrogenase.
 
  
  0.973
EAR51907.1
Short-chain dehydrogenase/reductase SDR.
 
  
  0.898
EAR51949.1
Short chain dehydrogenase.
 
  
  0.892
EAR50607.1
Hypothetical protein; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
  0.874
EAR50601.1
COG1349 Transcriptional regulators of sugar metabolism.
 
     0.777
EAR50602.1
Putative periplasmic binding abc transporter protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.746
rhaM
Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.744
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.686
EAR50174.1
Xylulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.686
EAR51299.1
Putative carbohydrate kinase; COG1070 Sugar (pentulose and hexulose) kinases; Belongs to the FGGY kinase family.
    
  0.686
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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