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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49659.1Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (202 aa)    
Predicted Functional Partners:
EAR52925.1
Putative ABC transporter, fused inner membrane subunits; COG0577 ABC-type antimicrobial peptide transport system, permease component.
   
 
 0.965
lolD
ABC lipoprotein efflux transporter, ATPase subunit, LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
   
 
 0.939
EAR50385.1
ABC lipoprotein efflux transporter, inner membrane subunit, LolE; COG4591 ABC-type transport system, involved in lipoprotein release, permease component.
   
 
 0.939
EAR52926.1
ABC transporter, ATPase subunit; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
   
 
 0.939
EAR49393.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
    
   0.920
lptD
Organic solvent tolerance protein, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.828
EAR49715.1
FtsK/SpoIIIE family protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
  
 0.682
EAR50178.1
COG0795 Predicted permeases.
 
     0.648
EAR49714.1
COG0436 Aspartate/tyrosine/aromatic aminotransferase.
     
 0.627
EAR52248.1
Putative quinoprotein; COG1520 FOG: WD40-like repeat.
  
   
 0.597
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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