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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49661.1Hypothetical protein. (108 aa)    
Predicted Functional Partners:
EAR50523.1
Hypothetical protein.
 
     0.689
EAR49660.1
Lipoprotein, putative; COG4764 Uncharacterized protein conserved in bacteria.
       0.685
EAR49780.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
   
 0.637
EAR50524.1
Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).
  
     0.555
EAR51495.1
Hypothetical protein.
  
     0.483
EAR49923.1
COG4391 Uncharacterized protein conserved in bacteria.
  
    0.453
EAR52998.1
COG1210 UDP-glucose pyrophosphorylase.
      
 0.432
EAR49980.1
S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde.
      
 0.405
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.