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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49669.1Probable carnitine operon oxidoreductase; COG1376 Uncharacterized protein conserved in bacteria. (83 aa)    
Predicted Functional Partners:
EAR49670.1
ErfK/YbiS/YcfS/YnhG protein.
 
     0.752
EAR49526.1
Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.716
EAR53071.1
COG3034 Uncharacterized protein conserved in bacteria.
 
     0.655
EAR49671.1
ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein; COG1376 Uncharacterized protein conserved in bacteria.
 
    
0.579
EAR49668.1
COG1376 Uncharacterized protein conserved in bacteria.
 
    
0.502
mepA
Penicillin-insensitive murein endopeptidase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
     0.458
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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