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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49537.1Possible transcriptional regulator, ArsR family protein; COG0640 Predicted transcriptional regulators. (100 aa)    
Predicted Functional Partners:
EAR49534.1
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
     0.646
EAR49536.1
YeeE/YedE family membrane protein; COG2391 Predicted transporter component.
       0.581
EAR49533.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
       0.575
EAR49535.1
Hypothetical protein; COG2391 Predicted transporter component.
       0.575
EAR51348.1
COG2217 Cation transport ATPase.
  
  
 0.425
EAR50848.1
PAS; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
     
 0.402
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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