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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51950.1Putative transcriptional regulatory protein; COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (316 aa)    
Predicted Functional Partners:
mtnK
Hypothetical protein; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
 
     0.850
EAR51949.1
Short chain dehydrogenase.
 
     0.826
mtnA-2
Translation initiation factor IF-2B subunit alpha; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
    0.778
EAR51944.1
Putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; COG1879 ABC-type sugar transport system, periplasmic component.
 
    0.698
EAR51946.1
COG1129 ABC-type sugar transport system, ATPase component.
 
    0.607
EAR51945.1
Putative sugar uptake ABC transporter permease protein; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
     0.602
EAR52704.1
Putative transketolase alpha subunit protein; COG3959 Transketolase, N-terminal subunit.
 
     0.547
EAR52703.1
COG3958 Transketolase, C-terminal subunit.
 
     0.482
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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