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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50914.1DNA-damage-inducible protein F; COG0534 Na+-driven multidrug efflux pump. (447 aa)    
Predicted Functional Partners:
EAR50549.1
COG1562 Phytoene/squalene synthetase.
   
   0.775
EAR49407.1
COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.771
EAR51439.1
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
   
    0.737
EAR50912.1
Thioesterase family protein; COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.733
EAR50913.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.711
EAR50910.1
Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
       0.554
EAR52151.1
Potassium uptake transporter, transmembrane subunit, TrkH; COG0168 Trk-type K+ transport systems, membrane components.
 
     0.455
EAR50911.1
Hypothetical protein.
       0.436
EAR50016.1
Trk system potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
     0.423
EAR50909.1
Transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
       0.419
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.