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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50924.1COG2186 Transcriptional regulators. (219 aa)    
Predicted Functional Partners:
EAR50926.1
Putative sugar-binding periplasmic abc transporter protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.879
EAR50925.1
Hypothetical protein; COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
 
     0.848
EAR50251.1
Hypothetical protein; COG2186 Transcriptional regulators.
  
     0.741
EAR50927.1
Hypothetical protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.711
EAR50928.1
Permease protein of suger ABC transporter; COG0395 ABC-type sugar transport system, permease component.
 
    0.661
EAR49748.1
Transcriptional regulator, GntR family protein; COG2186 Transcriptional regulators.
  
     0.607
EAR51927.1
COG2188 Transcriptional regulators.
  
    0.590
EAR51039.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
    0.581
EAR49999.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
    0.578
EAR52676.1
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
  
    0.568
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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