close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50267.1Putative L-sorbosone dehydrogenase; COG2133 Glucose/sorbosone dehydrogenases. (429 aa)    
Predicted Functional Partners:
EAR50268.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.590
EAR50269.1
Methyltransferase, putative; COG0500 SAM-dependent methyltransferases.
       0.590
EAR50270.1
COG2120 Uncharacterized proteins, LmbE homologs.
       0.590
EAR50271.1
COG1960 Acyl-CoA dehydrogenases.
       0.590
EAR50272.1
Hypothetical protein; COG0438 Glycosyltransferase.
       0.590
EAR50273.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.590
EAR52368.1
Putative sulfonate ABC transporter, periplasmic sulfonate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.581
EAR50274.1
Putative beta-(1-3)-glucosyl transferase; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.550
EAR50275.1
Transcriptional regulator, Fnr-type; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
     0.483
EAR52369.1
ABC transporter permease protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
  
     0.435
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.