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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51150.1COG2764 Uncharacterized protein conserved in bacteria. (139 aa)    
Predicted Functional Partners:
EAR52681.1
Rhodanese domain protein/cystathionine beta-lyase; COG0607 Rhodanese-related sulfurtransferase.
  
 
  0.809
EAR51378.1
3-demethylubiquinone-9 3-methyltransferase; COG3865 Uncharacterized protein conserved in bacteria.
 
  
 0.758
EAR51564.1
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
 
  0.749
cobB-2
COG0846 NAD-dependent protein deacetylases, SIR2 family; Belongs to the sirtuin family. Class III subfamily.
  
    0.632
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
    0.604
EAR49901.1
Probable oxidoreductase; COG0656 Aldo/keto reductases, related to diketogulonate reductase.
  
 
  0.522
EAR49733.1
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
  
 
  0.522
trpA
COG0159 Tryptophan synthase alpha chain; Belongs to the TrpA family.
    
  0.487
EAR51276.1
Probable transcriptional regulator; COG3629 DNA-binding transcriptional activator of the SARP family.
   
    0.481
EAR52176.1
Glyoxalase family protein; COG0346 Lactoylglutathione lyase and related lyases.
  
 
 0.466
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.