STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51158.1COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (323 aa)    
Predicted Functional Partners:
EAR51156.1
Hypothetical protein; COG4573 Predicted tagatose 6-phosphate kinase.
       0.773
EAR51157.1
Hypothetical protein; COG0524 Sugar kinases, ribokinase family.
       0.773
EAR51154.1
Hypothetical protein; COG4221 Short-chain alcohol dehydrogenase of unknown specificity.
 
     0.764
EAR51155.1
Putative oxidoreductase protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.737
EAR51159.1
Hypothetical protein; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.714
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.