STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51187.1COG0438 Glycosyltransferase. (376 aa)    
Predicted Functional Partners:
EAR50703.1
Glycosyl transferase (sulfolipid biosynthesis) protein; COG0183 Acetyl-CoA acetyltransferase.
   
  0.864
glgB
1,4-alpha-glucan branching enzyme (Glycogen branching enzyme); Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.859
EAR51188.1
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
 
  0.795
EAR52537.1
COG1640 4-alpha-glucanotransferase.
  
  
  0.764
EAR52538.1
Putative Alpha-amylase; COG0296 1,4-alpha-glucan branching enzyme.
   
  0.740
EAR52030.1
Hypothetical protein; COG0070 Glutamate synthase domain 3.
    
   0.731
EAR52998.1
COG1210 UDP-glucose pyrophosphorylase.
    
  0.726
EAR51986.1
COG0514 Superfamily II DNA helicase.
    
   0.724
EAR51987.1
COG0210 Superfamily I DNA and RNA helicases.
    
   0.724
EAR51988.1
COG0210 Superfamily I DNA and RNA helicases.
    
   0.724
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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