Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR51387.1Hypothetical protein; COG0520 Selenocysteine lyase. (478 aa)    
Predicted Functional Partners:
EAR49780.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.976
EAR51653.1
Suf C, ATPase; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.914
ttcA
Hypothetical protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.
 
 
    0.902
EAR50663.1
COG2166 SufE protein probably involved in Fe-S center assembly.
  
 0.893
EAR51656.1
FeS assembly protein SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.887
EAR51652.1
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
 0.885
EAR52681.1
Rhodanese domain protein/cystathionine beta-lyase; COG0607 Rhodanese-related sulfurtransferase.
    
 0.797
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.794
EAR50277.1
Mannose-6-phosphate isomerase; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.784
EAR51386.1
Glyoxalase family protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.746
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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