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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50174.1Xylulokinase; COG1070 Sugar (pentulose and hexulose) kinases. (487 aa)    
Predicted Functional Partners:
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.878
EAR52438.1
COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.831
rhaM
Hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.744
EAR51861.1
Hypothetical protein.
  
  
 0.744
EAR52610.1
Hypothetical protein; COG3822 ABC-type sugar transport system, auxiliary component.
    
  0.686
EAR50599.1
COG4952 Predicted sugar isomerase.
    
  0.686
rpiA
Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.643
EAR50173.1
ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.620
EAR52574.1
Hypothetical protein; COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
  
 
 0.571
tdh
L-threonine 3-dehydrogenase; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
  
 
  0.536
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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