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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51873.1Probable dipeptidase PepE; COG0006 Xaa-Pro aminopeptidase. (364 aa)    
Predicted Functional Partners:
EAR51877.1
Hypothetical protein.
 
     0.908
EAR51872.1
5-oxoprolinase (ATP-hydrolyzing); COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
 
     0.806
EAR51874.1
COG4126 Hydantoin racemase.
       0.773
EAR51880.1
Hypothetical protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
    0.753
EAR51878.1
Putative ABC transporter ATP-binding protein; COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
    0.751
EAR51875.1
5-oxoprolinase (ATP-hydrolyzing); COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit.
 
     0.745
EAR51881.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.736
EAR51879.1
COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
    0.702
EAR51876.1
5-oxoprolinase (ATP-hydrolyzing); COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
       0.701
EAR51883.1
COG1396 Predicted transcriptional regulators.
 
  
  0.658
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.