Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAR51893.1COG1802 Transcriptional regulators. (232 aa)    
Predicted Functional Partners:
EAR51894.1
Hypothetical protein.
  
    0.778
EAR53154.1
COG1802 Transcriptional regulators.
  
     0.775
EAR50259.1
COG1802 Transcriptional regulators.
  
     0.775
EAR51864.1
COG2186 Transcriptional regulators.
  
    0.772
EAR51799.1
COG1802 Transcriptional regulators.
  
     0.771
EAR52553.1
COG1802 Transcriptional regulators.
  
     0.768
EAR52363.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.752
EAR51892.1
Possible AbrB protein; COG3180 Putative ammonia monooxygenase.
       0.701
EAR51891.1
Vdcc protein; COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; Belongs to the UbiD family.
       0.637
EAR50924.1
COG2186 Transcriptional regulators.
  
    0.558
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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