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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50335.1COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain. (314 aa)    
Predicted Functional Partners:
EAR50336.1
Hypothetical protein; COG0637 Predicted phosphatase/phosphohexomutase.
 
     0.878
EAR50220.1
Probable sorbitol-binding periplasmic protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.528
EAR50337.1
ABC transporter, ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
      0.525
EAR50338.1
COG0842 ABC-type multidrug transport system, permease component.
       0.525
EAR51327.1
ABC sorbitol/mannitol transporter, periplasmic binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.481
EAR50222.1
Probable sorbitol/mannitol transport inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.418
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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