STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50370.1Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (344 aa)    
Predicted Functional Partners:
EAR52681.1
Rhodanese domain protein/cystathionine beta-lyase; COG0607 Rhodanese-related sulfurtransferase.
  
 0.829
EAR50369.1
COG1960 Acyl-CoA dehydrogenases.
  
    0.780
EAR50371.1
Hypothetical protein.
       0.772
EAR50368.1
Sua5/YciO/YrdC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.701
EAR50373.1
Hypothetical protein.
       0.666
EAR51642.1
COG0236 Acyl carrier protein.
  
 
   0.631
EAR50372.1
Hypothetical protein.
       0.612
EAR49934.1
Arsenate reductase; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
 
   0.608
EAR52227.1
Possible LuxR family protein; COG2771 DNA-binding HTH domain-containing proteins.
    
   0.588
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.549
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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