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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR49910.1Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1126 aa)    
Predicted Functional Partners:
EAR49909.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
 
  
 0.989
EAR50169.1
COG1538 Outer membrane protein.
  
 0.948
EAR52492.1
Hypothetical protein.
  
 0.879
EAR53087.1
GAF domain protein; COG0845 Membrane-fusion protein.
 
 0.851
EAR53089.1
Outer membrane efflux protein, putative; COG1538 Outer membrane protein.
  
 0.836
EAR51226.1
GAF domain protein; COG3605 Signal transduction protein containing GAF and PtsI domains.
  
 0.823
EAR51227.1
Peptidase, M50 family protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
 0.823
EAR52069.1
Peptidase, M50 family protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
  
 0.823
EAR52070.1
GAF domain protein; COG0845 Membrane-fusion protein.
  
 0.823
yajC
Preprotein translocase, YajC subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
    
 
 0.784
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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