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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51494.1Transglycosylase SLT domain protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (160 aa)    
Predicted Functional Partners:
EAR51492.1
Membrane protein; COG0668 Small-conductance mechanosensitive channel.
       0.536
EAR51493.1
Hypothetical protein; COG3970 Fumarylacetoacetate (FAA) hydrolase family protein.
       0.536
EAR53140.1
COG1749 Flagellar hook protein FlgE.
 
    0.474
EAR50282.1
COG0729 Outer membrane protein.
  
     0.467
EAR51725.1
Flagellum-specific ATP synthase; COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
  
    0.466
EAR51728.1
Flagellar biosynthesis protein.
  
    0.466
EAR50738.1
COG1677 Flagellar hook-basal body protein.
  
    0.466
EAR50741.1
H+-transporting two-sector ATPase, alpha/beta subunit; COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
  
    0.466
EAR50009.1
COG1539 Dihydroneopterin aldolase.
  
     0.459
EAR50209.1
Possible flagellar switch protein FliM.
 
    0.453
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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