Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAR51260.1Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (157 aa)    
Predicted Functional Partners:
EAR51259.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 
  0.965
EAR51261.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
  0.839
EAR51262.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.737
EAR51258.1
Hypothetical protein; COG0524 Sugar kinases, ribokinase family.
       0.520
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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