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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR51147.1Hypothetical protein; COG1874 Beta-galactosidase. (666 aa)    
Predicted Functional Partners:
EAR52972.1
Hypothetical protein; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
  
  0.781
EAR52715.1
Hypothetical protein.
   
  0.775
EAR52974.1
Probable alpha-galactosidase (melibiase) protein; COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
  
  0.763
EAR51906.1
Hypothetical protein; COG4354 Predicted bile acid beta-glucosidase.
  
  
  0.739
EAR50225.1
COG0383 Alpha-mannosidase.
  
     0.684
EAR52132.1
Hypothetical protein.
  
     0.641
EAR49728.1
COG0346 Lactoylglutathione lyase and related lyases.
  
     0.615
EAR51959.1
Rhamnosidase A.
  
 
  0.564
EAR52043.1
Hypothetical protein.
       0.538
EAR52047.1
Hypothetical protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.534
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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