Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAR52070.1GAF domain protein; COG0845 Membrane-fusion protein. (639 aa)    
Predicted Functional Partners:
EAR52069.1
Peptidase, M50 family protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
     0.949
EAR52071.1
Type I secretion target repeat protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
     0.945
EAR52068.1
SapC protein, putative.
 
     0.870
EAR52925.1
Putative ABC transporter, fused inner membrane subunits; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
 0.860
EAR53088.1
Hypothetical protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
     0.789
EAR53031.1
COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
  0.787
EAR51227.1
Peptidase, M50 family protein; COG0750 Predicted membrane-associated Zn-dependent proteases 1.
 
     0.787
EAR51223.1
COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
  0.785
EAR52244.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.779
EAR49910.1
Transporter, AcrB/AcrD/AcrF family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.779
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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