STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR50121.1Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis. (271 aa)    
Predicted Functional Partners:
gmd
NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
 
  0.847
EAR50120.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.840
fcl
Putative nucleotide di-P-sugar epimerase or dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
  0.764
EAR50131.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.672
EAR51194.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.671
EAR50273.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.649
EAR52578.1
Putative glycosly transferase; COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
     0.629
EAR50116.1
COG0110 Acetyltransferase (isoleucine patch superfamily).
 
  
 0.545
EAR50123.1
Hypothetical protein.
  
 
  0.544
EAR50119.1
Hypothetical protein.
       0.508
Your Current Organism:
Oceanicola granulosus
NCBI taxonomy Id: 314256
Other names: O. granulosus HTCC2516, Oceanicola granulosus HTCC2516, Oceanicola granulosus KCTC 12143, Oceanicola granulosus str. HTCC2516, Oceanicola granulosus strain HTCC2516
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.