STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADM08867.1Putative haloacid dehalogenase superfamily hydrolase. (240 aa)    
Predicted Functional Partners:
dapD
Hypothetical protein; Belongs to the transferase hexapeptide repeat family.
       0.800
ADM08868.1
Hypothetical protein.
       0.790
ADM08863.1
Peptidase/amylase-like protein.
 
     0.721
ADM08864.1
Peptidase U61, LD-carboxypeptidase A.
       0.597
ADM08865.1
Hypothetical protein.
       0.581
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
   0.575
ADM09128.1
Hypothetical protein.
  
     0.543
ADM08870.1
Pterin-4-alpha-carbinolamine dehydratase.
       0.538
ADM08616.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.518
nadE
NAD(+) synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.513
Your Current Organism:
Parvularcula bermudensis
NCBI taxonomy Id: 314260
Other names: P. bermudensis HTCC2503, Parvularcula bermudensis HTCC2503, Parvularcula bermudensis str. HTCC2503, Parvularcula bermudensis strain HTCC2503
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