STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADM09022.1Hypothetical protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (226 aa)    
Predicted Functional Partners:
ADM09023.1
DNA-binding response regulator.
       0.773
ADM09795.1
Hypothetical protein.
  
  
 0.756
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
  
 0.754
ADM09099.1
Hypothetical protein.
 
  
 0.662
ADM09021.1
Thiamine monophosphate synthase.
  
    0.593
murF
Hypothetical protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
    0.524
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
    0.522
rplX
50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
   
    0.469
miaB
Hypothetical protein; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
     0.460
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.457
Your Current Organism:
Parvularcula bermudensis
NCBI taxonomy Id: 314260
Other names: P. bermudensis HTCC2503, Parvularcula bermudensis HTCC2503, Parvularcula bermudensis str. HTCC2503, Parvularcula bermudensis strain HTCC2503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.