STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (560 aa)    
Predicted Functional Partners:
hutI
COG1228 Imidazolonepropionase and related amidohydrolases.
 
 
 0.999
hutH
COG2986 Histidine ammonia-lyase.
 
 0.999
EAQ45424.1
COG3741 N-formylglutamate amidohydrolase.
 
  
 0.948
EAQ45421.1
Formiminoglutamate deiminase; COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
  
 0.894
EAQ45426.1
Histidine utilization repressor; COG2188 Transcriptional regulators.
 
  
 0.837
EAQ44155.1
COG3758 Uncharacterized protein conserved in bacteria.
 
  
 0.654
EAQ44410.1
COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.509
EAQ44033.1
COG3741 N-formylglutamate amidohydrolase.
  
  
 0.457
Your Current Organism:
Roseobacter sp. MED193
NCBI taxonomy Id: 314262
Other names: R. sp. MED193
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