STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ44267.1Exopolysaccharide biosynthesis domain protein; COG0489 ATPases involved in chromosome partitioning. (370 aa)    
Predicted Functional Partners:
EAQ44266.1
Chain length determinant protein, putative; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 
 0.955
EAQ43299.1
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
     
 0.930
EAQ44268.1
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.919
EAQ45675.1
COG1596 Periplasmic protein involved in polysaccharide export.
  
 0.828
EAQ44265.1
Polysaccharide biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.821
EAQ44255.1
Glycosyl transferase, WecB/TagA/CpsF family protein; COG1922 Teichoic acid biosynthesis proteins; Belongs to the glycosyltransferase 26 family.
 
  
 0.811
EAQ44258.1
Glycosyl transferase, group 2 family protein; COG1216 Predicted glycosyltransferases.
 
   
 0.795
EAQ44256.1
Membrane protein, putative.
 
  
 0.788
EAQ44259.1
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
 
   
 0.770
EAQ44254.1
Glycosyl transferase, group 2 family protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.768
Your Current Organism:
Roseobacter sp. MED193
NCBI taxonomy Id: 314262
Other names: R. sp. MED193
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