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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ43445.1Hypothetical protein; COG4942 Membrane-bound metallopeptidase. (382 aa)    
Predicted Functional Partners:
EAQ44433.1
Cell division permease protein FtsX, putative.
 
 
 
 0.990
EAQ43444.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
  
  
 0.935
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.814
EAQ46982.1
Sensory box histidine kinase/response regulator hybrid; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
    
  0.688
EAQ47416.1
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; COG0642 Signal transduction histidine kinase.
    
  0.688
EAQ46431.1
Hypothetical protein; COG1344 Flagellin and related hook-associated proteins.
  
     0.680
EAQ46071.1
Hypothetical protein.
 
 
   0.657
EAQ43602.1
Hypothetical protein.
  
     0.628
EAQ44696.1
COG2861 Uncharacterized protein conserved in bacteria.
 
   
 0.621
cpoB
Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.594
Your Current Organism:
Roseobacter sp. MED193
NCBI taxonomy Id: 314262
Other names: R. sp. MED193
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