STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ47510.1Hypothetical protein. (423 aa)    
Predicted Functional Partners:
EAQ47511.1
Hypothetical protein.
 
    0.846
EAQ47509.1
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
       0.773
EAQ46026.1
COG0776 Bacterial nucleoid DNA-binding protein.
  
     0.648
EAQ47087.1
Lipoprotein, putative.
  
     0.642
EAQ44892.1
Lipoprotein, putative; COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase.
  
     0.633
EAQ47503.1
Hypothetical protein; COG0671 Membrane-associated phospholipid phosphatase.
    
  0.561
EAQ47508.1
Polar amino acid uptake family ABC transporter, ATP-binding protein; COG4598 ABC-type histidine transport system, ATPase component.
       0.548
EAQ47086.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.491
EAQ47685.1
COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.490
EAQ47507.1
Polar amino acid uptake family ABC transporter, periplasmic substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.467
Your Current Organism:
Roseobacter sp. MED193
NCBI taxonomy Id: 314262
Other names: R. sp. MED193
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.