Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAQ44259.1 | EAQ47580.1 | MED193_09475 | MED193_20344 | Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase. | Chaperonin csaA; COG0073 EMAP domain. | 0.785 |
EAQ44259.1 | guaA | MED193_09475 | MED193_04706 | Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.540 |
EAQ44259.1 | metG | MED193_09475 | MED193_19684 | Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.872 |
EAQ44259.1 | polA | MED193_09475 | MED193_15232 | Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.515 |
EAQ46363.1 | EAQ47580.1 | MED193_14247 | MED193_20344 | Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1. | Chaperonin csaA; COG0073 EMAP domain. | 0.540 |
EAQ46363.1 | guaA | MED193_14247 | MED193_04706 | Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.931 |
EAQ46363.1 | polA | MED193_14247 | MED193_15232 | Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.611 |
EAQ46363.1 | proC | MED193_14247 | MED193_20339 | Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.490 |
EAQ47578.1 | EAQ47580.1 | MED193_20334 | MED193_20344 | Hypothetical protein. | Chaperonin csaA; COG0073 EMAP domain. | 0.777 |
EAQ47578.1 | EAQ47581.1 | MED193_20334 | MED193_20349 | Hypothetical protein. | D-isomer specific 2-hydroxyacid dehydrogenase family protein; COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.682 |
EAQ47578.1 | proC | MED193_20334 | MED193_20339 | Hypothetical protein. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.670 |
EAQ47580.1 | EAQ44259.1 | MED193_20344 | MED193_09475 | Chaperonin csaA; COG0073 EMAP domain. | Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase. | 0.785 |
EAQ47580.1 | EAQ46363.1 | MED193_20344 | MED193_14247 | Chaperonin csaA; COG0073 EMAP domain. | Glutamate synthase, large subunit; COG0067 Glutamate synthase domain 1. | 0.540 |
EAQ47580.1 | EAQ47578.1 | MED193_20344 | MED193_20334 | Chaperonin csaA; COG0073 EMAP domain. | Hypothetical protein. | 0.777 |
EAQ47580.1 | EAQ47581.1 | MED193_20344 | MED193_20349 | Chaperonin csaA; COG0073 EMAP domain. | D-isomer specific 2-hydroxyacid dehydrogenase family protein; COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.838 |
EAQ47580.1 | guaA | MED193_20344 | MED193_04706 | Chaperonin csaA; COG0073 EMAP domain. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.499 |
EAQ47580.1 | metG | MED193_20344 | MED193_19684 | Chaperonin csaA; COG0073 EMAP domain. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.560 |
EAQ47580.1 | pheS | MED193_20344 | MED193_11982 | Chaperonin csaA; COG0073 EMAP domain. | COG0016 Phenylalanyl-tRNA synthetase alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. | 0.992 |
EAQ47580.1 | polA | MED193_20344 | MED193_15232 | Chaperonin csaA; COG0073 EMAP domain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.589 |
EAQ47580.1 | proC | MED193_20344 | MED193_20339 | Chaperonin csaA; COG0073 EMAP domain. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.799 |
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