Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23751.1T-DNA border endonuclease; COG3843 Type IV secretory pathway, VirD2 components (relaxase). (624 aa)    
Predicted Functional Partners:
EAQ23752.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.942
EAQ22902.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.790
EAQ23078.1
Hypothetical protein; COG0480 Translation elongation factors (GTPases).
 
     0.774
EAQ23750.1
Hypothetical protein.
       0.773
EAQ23767.1
Hypothetical protein.
 
     0.773
EAQ24750.1
Type IV secretion system coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.773
EAQ23766.1
COG3736 Type IV secretory pathway, component VirB8.
 
     0.770
EAQ23769.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.770
EAQ22918.1
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
 
     0.767
EAQ22915.1
COG3736 Type IV secretory pathway, component VirB8.
 
     0.765
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
Server load: medium (44%) [HD]