STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23874.1Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (251 aa)    
Predicted Functional Partners:
EAQ23012.1
Ferredoxin/Oxidoreductase FAD/NAD(P)-binding; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
     
 0.722
EAQ26644.1
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.722
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.670
EAQ26102.1
2-Pyrone-4,6-dicarboxylate lactonase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
    
 0.646
EAQ24942.1
COG1741 Pirin-related protein; Belongs to the pirin family.
 
  
 0.620
EAQ23873.1
COG1733 Predicted transcriptional regulators.
 
     0.593
EAQ24407.1
COG3971 2-keto-4-pentenoate hydratase.
  
  
 0.593
EAQ25977.1
Thiosulfate sulfurtransferase, putative; COG2897 Rhodanese-related sulfurtransferase.
 
      0.592
EAQ23876.1
Hypothetical protein.
 
     0.577
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.570
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.