Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ24735.1Hypothetical protein. (69 aa)    
Predicted Functional Partners:
EAQ24737.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.780
EAQ24734.1
Type IV secretion system protein B4, putative; COG3451 Type IV secretory pathway, VirB4 components.
       0.773
EAQ24736.1
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
       0.773
EAQ24732.1
Conjugal transfer protein, trbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
       0.675
EAQ24733.1
Hypothetical protein; COG3702 Type IV secretory pathway, VirB3 components.
       0.667
EAQ24738.1
Hypothetical protein.
       0.560
EAQ24731.1
Transglycosylase; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
       0.505
EAQ24739.1
Similar to Legionella vir protein; COG3704 Type IV secretory pathway, VirB6 components.
       0.477
EAQ24740.1
COG3736 Type IV secretory pathway, component VirB8.
       0.447
EAQ24741.1
Similar to Legionella vir protein; COG3504 Type IV secretory pathway, VirB9 components.
       0.436
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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