Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23106.1Hypothetical protein. (167 aa)    
Predicted Functional Partners:
EAQ23105.1
Hypothetical protein; COG3710 DNA-binding winged-HTH domains.
 
     0.883
EAQ23109.1
Transcriptional regulator, LysR family protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.511
EAQ23098.1
Putative transcriptional regulator; COG3710 DNA-binding winged-HTH domains.
 
     0.480
EAQ24594.1
COG0477 Permeases of the major facilitator superfamily.
  
     0.424
EAQ23931.1
Hypothetical protein; COG3655 Predicted transcriptional regulator.
  
     0.414
EAQ23905.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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