Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ22916.1TraF protein; COG0840 Methyl-accepting chemotaxis protein. (269 aa)    
Predicted Functional Partners:
EAQ22917.1
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
    0.948
EAQ22915.1
COG3736 Type IV secretory pathway, component VirB8.
 
     0.939
EAQ22909.1
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
 
     0.923
EAQ22913.1
Conjugal transfer protein; COG2948 Type IV secretory pathway, VirB10 components.
 
     0.922
EAQ22914.1
Conjugal transfer protein, trbG; COG3504 Type IV secretory pathway, VirB9 components.
 
     0.922
EAQ22910.1
Hypothetical protein.
 
     0.918
EAQ22912.1
COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
    0.901
EAQ22911.1
Hypothetical protein.
 
     0.891
EAQ24172.1
COG1749 Flagellar hook protein FlgE.
  
 
 0.879
EAQ22920.1
Hypothetical protein.
 
     0.875
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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