Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ23369.1Membrane protein, putative. (228 aa)    
Predicted Functional Partners:
EAQ23537.1
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
     
  0.788
EAQ23370.1
Hypothetical protein.
 
     0.780
EAQ23373.1
COG0642 Signal transduction histidine kinase.
 
     0.694
EAQ23371.1
Hypothetical protein.
 
     0.657
EAQ22966.1
COG2010 Cytochrome c, mono- and diheme variants.
  
     0.586
EAQ23917.1
Hypothetical protein.
 
     0.586
EAQ23367.1
Sigma-70 region 2; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family.
 
     0.555
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.532
EAQ22964.1
Hypothetical protein.
 
     0.528
EAQ24893.1
COG0642 Signal transduction histidine kinase.
  
     0.466
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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