Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23371.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
EAQ26382.1
WD domain/cytochrome c family protein; COG2319 FOG: WD40 repeat.
    
 0.904
EAQ23561.1
RNA polymerase sigma subunit; COG0666 FOG: Ankyrin repeat; Belongs to the sigma-70 factor family.
    
 0.901
EAQ26995.1
NADH dehydrogenase subunit C.
    
 0.901
EAQ25078.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.893
EAQ25079.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.893
EAQ24288.1
Hypothetical protein.
    
  0.871
EAQ23373.1
COG0642 Signal transduction histidine kinase.
 
 
   0.864
EAQ24859.1
COG0457 FOG: TPR repeat.
    
 0.858
EAQ25142.1
TPR domain protein; COG0457 FOG: TPR repeat.
    
 0.858
EAQ25855.1
Methyltransferase, FkbM family protein; COG0438 Glycosyltransferase.
    
 0.858
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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