Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23000.1Hypothetical protein; COG0215 Cysteinyl-tRNA synthetase. (81 aa)    
Predicted Functional Partners:
EAQ23002.1
Hypothetical protein.
 
     0.842
EAQ22855.1
Hypothetical protein.
  
     0.731
EAQ24793.1
Hypothetical protein.
  
     0.731
EAQ24794.1
Hypothetical protein; COG0464 ATPases of the AAA+ class.
  
     0.731
EAQ22857.1
COG4643 Uncharacterized protein conserved in bacteria.
 
     0.726
EAQ23072.1
Hypothetical protein.
 
     0.726
EAQ23003.1
Hypothetical protein.
  
     0.717
EAQ23722.1
Hypothetical protein.
 
     0.683
EAQ22999.1
Replication protein C.
 
     0.681
EAQ23061.1
Hypothetical protein.
 
     0.679
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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