Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ25343.1Membrane protein, putative. (166 aa)    
Predicted Functional Partners:
EAQ25332.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.969
EAQ25342.1
Lipoprotein, putative; COG0457 FOG: TPR repeat.
 
   
 0.966
EAQ25339.1
Type II/IV secretion system protein, TadC subfamily protein; COG4965 Flp pilus assembly protein TadB.
 
  
 0.962
EAQ25331.1
Hypothetical protein.
 
  
 0.944
EAQ25341.1
TPR domain protein; COG0457 FOG: TPR repeat.
 
   
 0.940
EAQ25336.1
ATPase, putative; COG4963 Flp pilus assembly protein, ATPase CpaE.
 
  
 0.933
EAQ25334.1
Bacterial type II/III secretion system protein; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.893
EAQ25344.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
 
     0.891
EAQ25340.1
Type II/IV secretion system protein, TadC subfamily protein; COG2064 Flp pilus assembly protein TadC.
 
     0.825
EAQ24944.1
Hypothetical protein.
 
  
 0.777
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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