Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23564.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
EAQ23561.1
RNA polymerase sigma subunit; COG0666 FOG: Ankyrin repeat; Belongs to the sigma-70 factor family.
 
     0.966
EAQ23563.1
Endonuclease.
 
  
 0.962
EAQ23565.1
Hypothetical protein.
 
   
 0.958
EAQ23562.1
Hypothetical protein; COG0323 DNA mismatch repair enzyme (predicted ATPase).
 
     0.956
EAQ23560.1
Hypothetical protein; COG2378 Predicted transcriptional regulator.
 
     0.813
EAQ23569.1
Modification methylase (Cytosine-specific methyltransferase; COG0270 Site-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.776
EAQ23568.1
Hypothetical protein; COG3183 Predicted restriction endonuclease.
 
     0.573
EAQ23566.1
Hypothetical protein; COG0126 3-phosphoglycerate kinase.
       0.559
EAQ27394.1
Putative glcG protein; COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.
  
     0.488
EAQ25576.1
Hypothetical protein.
  
     0.424
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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