Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ24318.1Hypothetical protein. (232 aa)    
Predicted Functional Partners:
EAQ24317.1
Hypothetical protein.
       0.818
EAQ24316.1
Acyltransferase family protein; COG2937 Glycerol-3-phosphate O-acyltransferase.
 
     0.564
EAQ23328.1
BNR repeat protein.
  
     0.529
EAQ24843.1
COG2203 FOG: GAF domain.
  
     0.466
EAQ22980.1
Hypothetical protein.
  
     0.451
EAQ23366.1
Membrane protein, putative.
  
     0.408
EAQ23349.1
COG0644 Dehydrogenases (flavoproteins).
  
     0.406
EAQ22929.1
COG2020 Putative protein-S-isoprenylcysteine methyltransferase.
  
     0.400
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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