Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ24387.1Lipoprotein, putative; COG2812 DNA polymerase III, gamma/tau subunits. (657 aa)    
Predicted Functional Partners:
EAQ23939.1
Lipoprotein, putative; COG3087 Cell division protein.
 
     0.780
EAQ27152.1
Hypothetical protein.
  
     0.746
EAQ24944.1
Hypothetical protein.
  
    0.741
EAQ27374.1
Hypothetical protein.
  
     0.717
EAQ26307.1
Membrane protein, putative.
  
     0.704
rne
Ribonuclease, Rne/Rng family protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
     
  0.699
EAQ25053.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.690
EAQ26325.1
Hypothetical protein.
  
  
  0.688
EAQ27186.1
Hypothetical protein; COG1530 Ribonucleases G and E.
  
     0.688
EAQ25483.1
MJ0042 family finger-like domain protein.
  
     0.677
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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