Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ24465.1Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators. (231 aa)    
Predicted Functional Partners:
EAQ26498.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.766
EAQ27460.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.716
EAQ24466.1
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.645
EAQ24464.1
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
     0.600
EAQ24460.1
Hypothetical protein; COG0665 Glycine/D-amino acid oxidases (deaminating).
 
    0.590
potA-3
Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
     0.551
EAQ24461.1
COG1177 ABC-type spermidine/putrescine transport system, permease component II.
       0.486
EAQ24462.1
COG1176 ABC-type spermidine/putrescine transport system, permease component I.
       0.486
EAQ22960.1
Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.
  
  
 0.420
EAQ25003.1
Transcriptional regulator, GntR family protein; COG1802 Transcriptional regulators.
  
     0.418
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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