Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ24574.1COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (151 aa)    
Predicted Functional Partners:
EAQ24579.1
Hypothetical protein.
 
     0.875
EAQ24578.1
Membrane protein; COG0730 Predicted permeases.
 
     0.873
EAQ24575.1
nifU domain protein; COG0694 Thioredoxin-like proteins and domains.
       0.663
EAQ24577.1
Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases.
       0.660
EAQ24576.1
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
       0.654
EAQ26347.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.558
EAQ25448.1
COG2960 Uncharacterized protein conserved in bacteria.
  
     0.510
EAQ24573.1
Hypothetical protein.
       0.497
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.496
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
     
 0.491
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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