Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ24575.1nifU domain protein; COG0694 Thioredoxin-like proteins and domains. (187 aa)    
Predicted Functional Partners:
EAQ26952.1
Putative aminotransferase; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
 0.974
EAQ26558.1
Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 0.957
EAQ26687.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
 
 0.924
EAQ27057.1
Iron-sulfur cluster assembly family protein; Belongs to the HesB/IscA family.
 
 0.911
EAQ23681.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.862
EAQ24497.1
COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.862
EAQ24576.1
Protease, putative; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
     
 0.854
EAQ24577.1
Ribosomal-protein-alanine acetyltransferase, putative; COG0456 Acetyltransferases.
       0.853
lipA
Lipoyl synthase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
  
 0.836
ctaA
Cytochrome c oxidase assembly protein; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
  
 
  0.825
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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