STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ24690.1COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (329 aa)    
Predicted Functional Partners:
EAQ24689.1
COG1171 Threonine dehydratase.
 
   
 0.892
EAQ24691.1
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
 
     0.806
EAQ25223.1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.799
EAQ24688.1
Peptidase, M24 family protein; COG0006 Xaa-Pro aminopeptidase.
 
     0.748
EAQ23025.1
COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.673
EAQ26590.1
COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
    
 0.669
EAQ23027.1
Proline racemase, putative; COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.652
EAQ23962.1
Putative Ornithine decarboxylase; COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.642
EAQ26916.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.615
EAQ24693.1
Hypothetical protein; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.613
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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