Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ24204.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
lysS
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.701
EAQ24345.1
Hypothetical protein.
  
     0.623
EAQ27214.1
Hypothetical protein; COG0524 Sugar kinases, ribokinase family.
  
     0.550
EAQ23119.1
DnaJ-like protein DjlA, putative; COG1076 DnaJ-domain-containing proteins 1.
  
     0.538
EAQ24646.1
Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.535
EAQ23131.1
Possible peptidoglycan binding protein; COG1652 Uncharacterized protein containing LysM domain.
  
     0.515
EAQ24035.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.504
EAQ25103.1
COG2366 Protein related to penicillin acylase.
  
     0.499
EAQ24644.1
HemY domain protein; COG3071 Uncharacterized enzyme of heme biosynthesis.
  
     0.468
EAQ22816.1
Transcriptional regulator, CarD family protein; COG1329 Transcriptional regulators, similar to M. xanthus CarD.
  
     0.457
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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