EAQ24001.1 protein (Roseovarius sp. 217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ24001.1

COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family. (186 aa)

Predicted Functional Partners:

EAQ23999.1

0.877

EAQ24000.1

0.807

EAQ23704.1

0.780

EAQ25680.1

0.754

EAQ25688.1

0.739

EAQ25429.1

0.673

EAQ25198.1

0.513

EAQ23345.1

0.503

EAQ25231.1

0.503

EAQ24669.1

0.503

Your Current Organism:

Roseovarius sp. 217

NCBI taxonomy Id: 314264
Other names: R. sp. 217

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ23345.1	EAQ24001.1	ROS217_03215	ROS217_15740	COG0213 Thymidine phosphorylase.	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	0.503
EAQ23345.1	EAQ24669.1	ROS217_03215	ROS217_10957	COG0213 Thymidine phosphorylase.	COG0402 Cytosine deaminase and related metal-dependent hydrolases.	0.788
EAQ23345.1	EAQ25429.1	ROS217_03215	ROS217_06715	COG0213 Thymidine phosphorylase.	COG0167 Dihydroorotate dehydrogenase.	0.771
EAQ23704.1	EAQ24001.1	ROS217_08499	ROS217_15740	Cobalamin biosynthesis protein BluB; COG0778 Nitroreductase.	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	0.780
EAQ23704.1	EAQ25680.1	ROS217_08499	ROS217_05024	Cobalamin biosynthesis protein BluB; COG0778 Nitroreductase.	Riboflavin biosynthesis protein RibF; COG0196 FAD synthase; Belongs to the ribF family.	0.409
EAQ23704.1	EAQ25688.1	ROS217_08499	ROS217_05064	Cobalamin biosynthesis protein BluB; COG0778 Nitroreductase.	Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.	0.522
EAQ23999.1	EAQ24000.1	ROS217_15730	ROS217_15735	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.	0.805
EAQ23999.1	EAQ24001.1	ROS217_15730	ROS217_15740	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	0.877
EAQ23999.1	EAQ25429.1	ROS217_15730	ROS217_06715	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	COG0167 Dihydroorotate dehydrogenase.	0.646
EAQ23999.1	EAQ25688.1	ROS217_15730	ROS217_05064	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.	0.811
EAQ24000.1	EAQ23999.1	ROS217_15735	ROS217_15730	COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	0.805
EAQ24000.1	EAQ24001.1	ROS217_15735	ROS217_15740	COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	0.807
EAQ24000.1	EAQ25688.1	ROS217_15735	ROS217_05064	COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.	Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.	0.538
EAQ24001.1	EAQ23345.1	ROS217_15740	ROS217_03215	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	COG0213 Thymidine phosphorylase.	0.503
EAQ24001.1	EAQ23704.1	ROS217_15740	ROS217_08499	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Cobalamin biosynthesis protein BluB; COG0778 Nitroreductase.	0.780
EAQ24001.1	EAQ23999.1	ROS217_15740	ROS217_15730	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Bacterial luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.	0.877
EAQ24001.1	EAQ24000.1	ROS217_15740	ROS217_15735	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.	0.807
EAQ24001.1	EAQ24669.1	ROS217_15740	ROS217_10957	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	COG0402 Cytosine deaminase and related metal-dependent hydrolases.	0.503
EAQ24001.1	EAQ25198.1	ROS217_15740	ROS217_03870	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	COG0307 Riboflavin synthase alpha chain.	0.513
EAQ24001.1	EAQ25231.1	ROS217_15740	ROS217_04035	COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.	Hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.	0.503