Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ23237.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
EAQ23234.1
Hypothetical protein; COG0504 CTP synthase (UTP-ammonia lyase).
       0.818
EAQ23235.1
COG4653 Predicted phage phi-C31 gp36 major capsid-like protein.
       0.784
EAQ23236.1
Peptidase U35, phage prohead; COG3740 Phage head maturation protease.
       0.784
EAQ23238.1
COG4695 Phage-related protein.
       0.784
EAQ23232.1
Hypothetical protein.
       0.778
EAQ23233.1
HNH nuclease / Probable phage PHI-105 holin-like protein; COG1403 Restriction endonuclease.
       0.751
EAQ23231.1
Uncharacterized phage protein (possible DNA packaging).
       0.746
EAQ23227.1
COG3747 Phage terminase, small subunit.
       0.740
EAQ23228.1
COG5614 Bacteriophage head-tail adaptor.
       0.740
EAQ23229.1
Hypothetical protein.
       0.739
Your Current Organism:
Roseovarius sp. 217
NCBI taxonomy Id: 314264
Other names: R. sp. 217
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